Description

“Python C-extension for a simple validator for fasta files. The module emits the validated file or an error log upon validation failure.”

Input

name:type
description
pattern

meta:map

Groovy Map containing file information e.g. [ id:‘test’ ]

fasta:file

Input fasta file

*.fasta

Output

name:type
description
pattern

success_log

meta:map

Groovy Map containing file information e.g. [ id:‘test’ ]

*.success.log:file

Log file for successful validation

*.success.log

error_log

meta:map

Groovy Map containing file information e.g. [ id:‘test’ ]

*.error.log:file

Log file for failed validation

*.error.log

versions

versions.yml:file

File containing software versions

versions.yml

Tools

fasta_validate
MIT

"Python C-extension for a simple C code to validate a fasta file. It only checks a few things, and by default only sets its response via the return code, so you will need to check that!"

github.com/linsalrob/py_fasta_validator 10.5281/zenodo.5002710
included in
genomeqcmultiplesequencealignseqsubmit
maintainer
Github user gallvp
get in touch
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